Naked Snake is the protagonist of Metal Gear Solid 3, a former Green Beret and a field operative for the newly-formed FOX unit. In the Virtuous Mission, Snake is given the orders to rescue a defecting Soviet scientist, but is apparently betrayed by his former mentor, The Boss.
A week later, FOX unit and Snake were assigned Operation Snake Eater, in which the objective was to eliminate The Boss and her new Soviet ally, Colonel Volgin, rescue Sokolov and destroy the Shagohod. It was during this mission that Snake came across the prototype designs for the TX-55 Metal Gear bipedal tank from Granin, who was sending them to a colleague in America. This colleague was presumably the grandfather of Hal Emmerich, aka Otacon
During this mission, Snake had his right eye accidentally damaged by the muzzle flash from Ocelot's Colt Single Action Army, while in captivity for torture, in order to save EVA's life. However, he succeeded in completing the mission, and killed The Boss and Colonel Volgin. For this, he was awarded the code name Big Boss and the Distinguished Service Cross by President Lyndon Johnson.